The Metawatt binner is a graphical binning tool that makes use of multivariate statistics of tetranucleotide frequencies and differential coverage based binning. It also performs taxonomic assessment of binning quality (via diamond BLASTx). Created bins can be edited and exported as fasta. The Metawatt is implemented in Java SWING and minimally depends on Diamond, HMMer3.1, BBMap, Prodigal and the Batik library for the export of SVG graphics.

Citation: Strous M, Kraft B, Bisdorf R, TegetMeyer H (2012) The binning of metagenomic contigs for microbial physiology of mixed cultures. Frontiers in Microbial Physiology and Metabolism 3:410. doi: 10.3389/fmicb.2012.00410

Features

  • Combined tetranucleotide and differential coverage binning of metagenomic contigs
  • Graphical user interface for data exploration
  • Taxonomic Profiling of Bins with Diamond blastp
  • Detection of Conserved Single Copy Genes
  • Phylogenetic Treeing of bins based on conserved genes
  • Interactive GC/coverage or coverage/coverage plots
  • Also runs fully automatically on the command line

Project Samples

Project Activity

See All Activity >

Categories

Bio-Informatics

License

Academic Free License (AFL)

Follow metawatt

metawatt Web Site

Other Useful Business Software
Everything Your Small Business Needs to Succeed | Connecteam Icon
Everything Your Small Business Needs to Succeed | Connecteam

Connecteam is an award-winning all-in-one employee management solution for daily operations, communications, and human resource management.

Easily engage and manage non-desk employees with Connecteam’s mobile-first platform that helps improve communication, enhance daily processes and increase productivity with custom checklists, forms, and reports. Schedule shifts and track accurate work hours with Connecteam’s automated GPS time clock and easily export approved timesheets to payroll. Connecteam helps you keep your employees sharp thanks to knowledge base centers and advanced training courses. Raise morale with employee recognition rewards and keep the entire company updated through the main news feed.
Rate This Project
Login To Rate This Project

User Ratings

★★★★★
★★★★
★★★
★★
0
1
0
0
0
ease 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 5 / 5
features 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 4 / 5
design 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 5 / 5
support 1 of 5 2 of 5 3 of 5 4 of 5 5 of 5 5 / 5

User Reviews

  • I really like the program. It was easy to install and to run. it will be good if they can support bigger samples (it runs out of memory with my 1.2 gb files) or have a batch mode to work with all samples from a folder. Overall a useful program
Read more reviews >

Additional Project Details

Operating Systems

Linux

Languages

English

Intended Audience

Science/Research

User Interface

Java Swing

Programming Language

Java

Related Categories

Java Bio-Informatics Software

Registered

2012-10-15